*Help* Multiple mods messing up ScriptRef for items/npcs

I've recently been installing a handful of mods for BGEE as I love having so much gameplay variety and increased difficulty available for me to use.

Every time I install all the mods I have an issue with mods scriptreference numbers being messed up or non-existant. I am intrigued if there is a solution available to guarantee that each mod will use different scriptref numbers rather than rewriting per-existant ones for other mods?

Current Mods Running:
BG2 Tweaks
TeamBG Armor Pack
TeamBG Weapon Pack
TeamBG HLA & Level 40
BPSeries
Convient Ammunition
Dark Horizons
IWDification
Karatur
More Stuff for Mages
Rogue Rework
Saradas Magic
Stratagems
Wandcase

The most common problem issues with the scriptref are:
Karatur's Items and NPC Dialogue.
ScriptRef Advanced Characters (Ninja-to being replaced with Ninjat�? - Easy fix with Near Infinity)


Thanks for anyone who can help me :)