Reputation will not increase

I've recently done a fresh install, then put in a bunch of mods using BWS. I don't quite remember which ones i put in, but I am curious because i've done a few early quests and didn't gain any reputation for them, but i've been losing reputation for bringing certain characters along/ killing unshey. My reputation reached 5 and it should've gone up at least 3 times due to 2 quests and a temple turn in, but it won't, is anyone aware of a mod or a piece of a mod that removes reputation increases?